HPV 18 variants in women with cervical cancer in Northeast Brazil

Abstract Background Human Papillomavirus (HPV) is the main etiological factor for the development of cervical cancer. HPV 18 is the second most frequent type, accounting for up to 65% of all cases. HPV intratypic variation may influence the potential for progression to invasive cancer. The aim of this study was to evaluate the prevalence of human papillomavirus 18 intratypic variants in cervical cancer samples from women in the state of Maranhão, Brazil. Methods The study included 118 women over 18 years of age with a diagnosis of cervical cancer. Tumor fragments were collected and subjected to DNA extraction and Polymerase Chain Reaction (PCR) for HPV detection using the PGMY09/11 and GP+5/6 primers. Positive samples were submitted to automated sequencing for viral genotyping. To determine the HPV 18 lineages, positive samples were submitted to PCR, using specific primers to amplify the LCR and E6 regions of HPV 18 virus. Results HPV was present in 88 women (73.3%). Of those, 48 (54%) were HPV 16, the most prevalent, followed by 12 (13.6%) HPV 18. Histologically, squamous cell carcinoma was predominant (79.1%). Among the HPV 18 variants identified, 10 (80%) belonged to lineage A, and sublineages A1, A2, A3, and A4. Two (29%) HPV 18 B variant was also detected, with the sublineages B1 and B2. In this study, the C variant was not found. There was no statistically significant association between the HPV 18 lineages found and sociodemographic and lifestyle variables (p > 0.05). Conclusions A higher frequency of HPV 16 and 18 were found in women with cervical cancer in the state of Maranhão, Brazil, with a high prevalence of the lineage A among women with HPV 18.

Genetic differentiation in populations of Aedes aegypti (Diptera, Culicidae) dengue vector from the Brazilian state of Maranhão

ABSTRACT Aedes (Stegomyia) aegypti is the vector responsible for the transmission of the viruses that cause zika, yellow and chikungunya fevers, the four dengue fever serotypes (DENV - 1, 2, 3, 4), and hemorrhagic dengue fever in tropical and subtropical regions around the world. The present study investigated the genetic differentiation of the 15 populations of this vector in the Brazilian state of Maranhão, based on the mitochondrial ND4 marker. A total of 177 sequences were obtained for Aedes aegypti, with a fragment of 337 bps, 15 haplotypes, 15 polymorphics sites, haplotype diversity of h = 0.6938, and nucleotide diversity of π = 0.01486. The neutrality tests (D and Fs) were not significant. The AMOVA revealed that most of the variation (58.47%) was found within populations, with FST = 0.41533 (p < 0.05). Possible isolation by distance was tested and a significant correlation coefficient (r = 0.3486; p = 0.0040) was found using the Mantel test. The phylogenetic relationships among the 15 haplotypes indicated the existence of two distinct clades. This finding, together with the population parameters, was consistent with a pattern of genetic structuring that underpinned the genetic differentiation of the study populations in Maranhão, and was characterized by the presence of distinct lineages of Aedes aegypti.

Bat fauna of the Cerrado savanna of eastern Maranhão, Brazil, with new species occurrences / Quiropterofauna do cerrado leste maranhense, Brasil, com ocorrência de novos registros

Abstract In Brazil, 179 bat species have been recorded to date, representing 68 genera and nine families. Few data are available on the bat fauna of the state of Maranhão, so the present study was based on a survey of the bat fauna of the Inhamum Municipal Environmental Protection Area (APA Inhamum) in the Cerrado savanna of the eastern extreme of the state. This inventory provides new records of bat species for the state of Maranhão and the Cerrado biome. A total of 31 species (four families) were collected, representing 39% of the bat species known to occur in Maranhão and 28.71% of the species described for the Cerrado. The family Phyllostomidae was the most diverse, with 23 species (74.20% of the total), and also the most abundant, with 86.09% of the specimens collected. The Molossidae (four species) was the second most diverse, followed by the Vespertilionidae (three species) and the Emballonuridae (one species). Carollia perspicillata was the most abundant species (28%).The records of Artibeus fimbriatus and Platyrrhinus fusciventris are the first for the Cerrado and were also recorded in Maranhão for the first time. The cumulative species curve did not reach an asymptote. The species Dermanura gnoma, Lasiurus blossevillii, Lasiurus ega, Micronycteris schmidtorum, Molossops temminckii, Platyrrhinus cf. recifinus, Phylloderma stenops and Trachops cirrhosus, were also recorded in Maranhão for the first time demonstrating the value of for mammal inventories and emphasizing the need for further surveys in this poorly-known region.

Resumo Atualmente são registrados para o Brasil, nove famílias, 68 gêneros e 179 espécies de morcegos. No Maranhão, poucas são as informações sobre a fauna de morcegos, portanto objetivou-se realizar um levantamento faunístico e reportar os novos registros de morcegos para o Cerrado leste maranhense na Área de Proteção Ambiental Municipal do Inhamum. Foram coletadas 31 espécies, distribuídas em quatro famílias representando 39% das espécies de morcegos registradas no Maranhão e 28,71% das espécies descritas para o Cerrado. A família Phyllostomidae apresentou a maior riqueza (23 espécies - 74,20%) e abundância (86,09%). A família Molossidae (quatro espécies) foi a segunda mais representativa, seguida de Vespertilionidae (três espécies) e Emballonuridae (uma espécie). Carollia perspicillata foi a espécie mais abundante (28%). As espécies Artibeus fimbriatus e Platyrrhinus fusciventris constituem novos registros para o Cerrado e o primeiro registro para o Maranhão. A curva de acumulação de espécies mostrou-se não estabilizada. As espécies Dermanura gnoma, Lasiurus blossevillii, Lasiurus ega, Micronycteris schmidtorum, Molossops temminckii, Platyrrhinus cf. recifinus, Phylloderma stenops e Trachops cirrhosus constituem novos registros para o Maranhão. As espécies coletadas na APA do Inhamum correspondem a novos registros para o Cerrado do leste maranhense evidenciando-a como uma área de extrema importância para levantamentos mastozoológicos, mostrando que a região necessita de mais estudos.

Parasitas de populações naturais e artificiais de tucunaré (Cichla spp.) / Parasites of natural and artificial populations of Cichla spp.

Os ciclídeos, peixes economicamente importantes na região, foram coletados no médio rio Negro (Cichla orinocensis, C. monoculus e C. temensis) e na iIlha da Marchantaria (C. monoculus), no Amazonas e em três açudes do Piauí (C. kelberi). Para verificar a ocorrência de parasitas as brânquias, narinas e intestino foram removidos e observados em microscópio esteroscópio, a boca a olho nu. Os parasitas encontrados foram retirados e armazenados em álcool 70 por cento para posterior identificação. Dos 96 espécimes analisados provenientes do rio Negro 51 (52 por cento) estavam parasitadas; dos 34 da ilha da Marchantaria 16 (47 por cento) e dos 50 dos açudes do Piauí, apenas dois (4 por cento). Nos peixes coletados no Amazonas, as brânquias estavam parasitadas por Ergailus coatiarus, Argulus amazonicus, Acusicola tucunarense e a boca por Braga cichlae, enquanto que os peixes do Piauí não apresentaram parasitas branquiais, mas registrou-se a ocorrência do nematóide Procamallanus (Spirocamallanus) inopinatus, parasita intestinal.

The cichlids, economically important fish specie in the region, were collected along the Negro River (Cichla orinocensis, C. monoculus e C. temensis) and in the Marchantaria Island (C. monoculus) Amazon State and in three reservoirs localized in the Piauí State. In order to verify the occurrence of parasites, gills, nostrils and the intestine were removed and observed by stereomicroscope and the mouth by naked eyes. The observed parasites were isolated and conserved in 70 percent ethanol for posterior identification. From 96 specimens collected in Negro River, 51 specimens (52 percent) were parasitized. In the Marchantaria Island from 34 specimens collected, 16 (47 percent) showed the presence of parasites, and from 50 specimens collected in the reservoirs only 2 (4 percent) were parasitized. In fishes collected in the Amazon State, the grill was parasitized by Ergailus coatiarus, Argulus amazonicus, Acusicola tucunarense and the mouth by Braga cichlae, whereas the species collected in the Piauí State did not show the presence of parasites in the grill, but the occurrence of Procamallanus (Spirocamallanus) inopinatus an intestinal nematode parasite.

Novel 12S mtDNA findings in sloths (Pilosa, Folivora) and anteaters (Pilosa, Vermilingua) suggest a true case of long branch attraction

We sequenced 12S RNA mtDNA for the majority of the extant species of sloths and anteaters and compared our results with previous data obtained by our group using 16S RNA mtDNA in the same specimens and to GenBank sequences of the extinct giant sloth Mylodon. Our results suggest that pigmy-anteaters may be a case of the long-branch attraction phenomenon and also show the large genetic difference between the Amazonian and Atlantic forest three-toed sloths, contrasting with the small differences observed between the two non-Atlantic forest forms of sloths. These results have important implications for the taxonomy of sloths and anteaters and strongly suggest the placement of pigmy anteaters in their own family (Cyclopidae) and raising the taxonomic status of Bradypus torquatus to a genus.

Phylogenetic analysis of 16S mitochondrial DNA data in sloths and anteaters

We sequenced part of the 16S rRNA mitochondrial gene in 17 extant taxa of Pilosa (sloths and anteaters) and used these sequences along with GenBank sequences of both extant and extinct sloths to perform phylogenetic analysis based on parsimony, maximum-likelihood and Bayesian methods. By increasing the taxa density for anteaters and sloths we were able to clarify some points of the Pilosa phylogenetic tree. Our mitochondrial 16S results show Bradypodidae as a monophyletic and robustly supported clade in all the analysis. However, the Pleistocene fossil Mylodon darwinii does not group significantly to either Bradypodidae or Megalonychidae which indicates that trichotomy best represents the relationship between the families Mylodontidae, Bradypodidae and Megalonychidae. Divergence times also allowed us to discuss the taxonomic status of Cyclopes and the three species of three-toed sloths, Bradypus tridactylus, Bradypus variegatus and Bradypus torquatus. In the Bradypodidae the split between Bradypus torquatus and the proto-Bradypus tridactylus/B. variegatus was estimated as about 7.7 million years ago (MYA), while in the Myrmecophagidae the first offshoot was Cyclopes at about 31.8 MYA followed by the split between Myrmecophaga and Tamandua at 12.9 MYA. We estimate the split between sloths and anteaters to have occurred at about 37 MYA